Data science and software engineering at RS focuses primarily on development of our proprietary Facets™ Prioritization Engine. However, we are excited to share select capabilities and collaborate on software projects that we believe might be of benefit to the broader bioinformatics and biopharma ecosystem. A complete list of RS open-source projects is available at related-sciences on GitHub.
Representing ontologies and computing similarity between terms in Python. Based on the NetworkX library with read support for OBO, OWL, and JSON formats. The networkx-data companion project provides popular biomedical ontologies pre-loaded into NXOntology format including MeSH and PubChem Classifications.
Extracting the Ensembl genes catalog to simple tables, with support for human, mouse, and rat genomes. Working towards a collaborative and open framework for easy access to Ensembl gene metadata.
Enabling big computation via GitHub Actions by providing a GitHub self-hosted runner for Google Compute Engine.